Publications

Peer-reviewed articles, preprints, and book chapters by Matthew Montierth.

A current list of my published and in-progress work. Google Scholar keeps a citation record, and my ORCID is 0000-0002-0860-1420.

Journal articles

  • Montierth, M. D., Yan, H., Xie, L., Nemeth, K., Pan, X., Li, R., Ercan, C., Yang, P., Sinjab, A., Zhou, T., Peng, F., Singh, M., Wang, L., Kopetz, S., Kadara, H., Yuan, Y., Calin, G., Wang, W., "DeMixNB: deconvolution of sparse-count RNA sequencing data for tumor cells using embedded negative binomial distributions." Genome Biology 2026. doi: 10.1186/s13059-026-04234-4

  • Dai, Y., Pan, X., Guo, S., Ji, S., Cao, S., Montierth, M. D., Jiang, Y., Chang, J. T., Shi, L., Shalapour, S., Echeverria, G. V., Yates, L., Staaf, J., Lim, B., Yuan, Y., Wang, W., "Tumor microenvironment transcriptional activity enables robust stratification of chemotherapy response in triple-negative breast cancer." Cell Reports Medicine 2026. doi: 10.1016/j.xcrm.2026.102610

  • Dai, Y., Guo, S., Pan, Y., Castignani, C., Montierth, M. D., Van Loo, P., Wang, W. "A guide to transcriptomic deconvolution in cancer." Nature Reviews Cancer 2025. doi: 10.1038/s41568-025-00886-9. Epub 2025 Dec 2. PMID: 41331516

  • Cermakova, K., Tao, L., Dejmek, M., Sala, M., Montierth, M. D., Chan, Y. S., Patel, I., Chambers, C., Loeza Cabrera, M., Hoffman, D., Parchem, R. J., Wang, W., Nencka, R., Barbieri, E., & Hodges, H. C. , "Reactivation of the G1 enhancer landscape underlies core circuitry addiction to SWI/SNF." Nucleic Acids Research 2024. doi: 10.1093/nar/gkad1081Epub 2023 Nov 23. PMID: 37993417; PMCID: PMC10783513

  • Wang, J. R., Montierth, M., Xu, L., Goswami, M., Zhao, X., Cote, G., Wang, W., Iyer, P., Dadu, R., Busaidy, N. L., Lai, S. Y., Gross, N. D., Ferrarotto, R., Lu, C., Gunn, G. B., Williams, M. D., Routbort, M., Zafereo, M. E., & Cabanillas, M. E., "Impact of Somatic Mutations on Survival Outcomes in Patients With Anaplastic Thyroid Carcinoma." JCO Precision Oncology 2022. doi: 10.1200/PO.21.00504Epub 2022 Aug 6. PMID: 35977347; PMCID: PMC10530586

  • Cao, S., Wang, J.R., Ji, S., Yang, P., Dai, Y., Guo, S., Montierth, M.D., Shen, J.P., Zhao, X., Chen, J., Lee, J.J., Guerrero, P.A., Spetsieris, N., Engedal, N., Taavitsainen, S., Yu, K., Livingstone, J., Bhandari, V., Hubert, S.M., Daw, N.C., Futreal, P.A., Efstathiou, E., Lim, B., Viale, A., Zhang, J., Nykter, M., Czerniak, B.A., Brown, P.H., Swanton, C., Msaouel, P., Maitra, A., Kopetz, S., Campbell, P., Speed, T.P., Boutros, P.C., Zhu, H., Urbanucci, A., Demeulemeester, J., Van Loo, P., Wang, W., "Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression." Nature Biotechnology 2022. doi: 10.1038/s41587-022-01342-xEpub 2022 Jun 13. PMID: 35697807; PMCID: PMC9646498

  • Miller, J. M., Beales, J. T., Montierth, M. D., Briggs, F. B., Frodsham, S. F., & Davis, M. F. , "The impact of multiple sclerosis disease status and subtype on hematological profile." International journal of environmental research and public health 2021. doi: 10.3390/ijerph18063318Epub 2021 Mar 23. PMID: 33807004; PMCID: PMC8004915

  • Johnson, D. K., Reynolds, K. M., Poole, B. D., Montierth, M. D., Todd, V. M., Barnado, A., & Davis, M. F., "Contribution of viral infection to risk for cancer in systemic lupus erythematosus and multiple sclerosis." PLOS ONE 2021 doi: 10.1371/journal.pone.0243150Epub 2021 Jan 22. PMID: 33481783; PMCID: PMC7822541

  • Gao F, Pan X, Dodd-Eaton EB, Recio CV, Montierth MD, Bojadzieva J, Mai PL, Zelley K, Johnson VE, Braun D, Nichols KE, Garber JE, Savage SA, Strong LC, Wang W. "A pedigree-based prediction model identifies carriers of deleterious de novo mutations in families with Li-Fraumeni syndrome" Genome Research 2020 Aug;30(8):1170-1180. doi: 10.1101/gr.249599.119. Epub 2020 Aug 18. PMID: 32817165; PMCID: PMC7462073

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Preprints

  • Jiang, Y., Montierth, M. D., Yu, K., Ji, S., Guo, S., Tran, Q., Liu, X., Shin, S. J., Cao, S., Li, R., Tang, Y., Lesluyes, T., Kopetz, S., Ajani, J., Msaouel, P., Subudhi, S. K., Aparicio, A., Sharma, P., Shen, J. P., … Wang, W., "Pan-cancer subclonal mutation analysis of 7,827 tumors predicts clinical outcome." bioRxiv. 2024 doi: 10.1101/2024.07.03.601939

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Book chapters

  • Ji, S., Montierth, M. D., & Wang, W., "MuSE: A Novel Approach to Mutation Calling with Sample-Specific Error Modeling." In C. Ng & S. Piscuoglio (Eds.), Variant Calling: Methods and Protocols (pp. 21–27). Springer US. 2022 doi: 10.1007/978-1-0716-2293-3_2 PMID: 35751806

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